HomeChemistry › Q42
ChemistryBiomolecules
Which of the following statements are correct about the secondary structure of DNA?
A. DNA double helix has a right-handed helical structure.
B. The two strands of DNA are parallel to each other.
C. In DNA, Adenine pairs with Thymine by two hydrogen bonds.
D. In DNA, Guanine pairs with Cytosine by three hydrogen bonds.
Options
1
A and B only
2
A, C and D only
3
B, C and D only
4
All A, B, C and D
Correct Answer
Option 2 : A, C and D only
Solution — Each Statement
A

Statement A — TRUE ✓

The Watson-Crick double helix of B-DNA (the most common form) has a right-handed helical structure. The helix coils clockwise when viewed from above (like a conventional screw). This is one of the key features of the secondary structure proposed by Watson and Crick in 1953.

B

Statement B — FALSE ✗

The two strands of DNA are ANTI-PARALLEL, not parallel. One strand runs 5'→3' and the complementary strand runs 3'→5'. This antiparallel arrangement is essential for proper base pairing and is a fundamental feature of the double helix.

C

Statement C — TRUE ✓

Adenine (A) pairs with Thymine (T) by exactly 2 hydrogen bonds. This AT base pair is less stable than GC pairs. Remember: A=T (2 bonds), G≡C (3 bonds). The double and triple bond symbols indicate the number of H-bonds.

D

Statement D — TRUE ✓

Guanine (G) pairs with Cytosine (C) by exactly 3 hydrogen bonds. The extra H-bond makes GC pairs more stable and requires more energy (higher temperature) to separate. DNA with high GC content has a higher melting temperature (Tm).

Theory: DNA and RNA Structure
1. Watson-Crick Double Helix

In 1953, James Watson and Francis Crick proposed the double helix model of DNA, based on X-ray crystallography data from Rosalind Franklin and Erwin Chargaff's base pairing rules. The model explained how genetic information is stored and replicated. The key features of B-DNA (the most common form found in cells):

📌 Double-stranded helix — two polynucleotide chains

📌 Right-handed helix (coils clockwise when viewed from top)

📌 Antiparallel strands: one 5'→3', other 3'→5'

📌 Sugar-phosphate backbone on outside; bases inside

📌 Bases held by hydrogen bonds (A=T: 2 H-bonds; G≡C: 3 H-bonds)

📌 Stacking interactions between adjacent bases also stabilise helix

📌 Pitch (one complete turn) = 3.4 nm, contains 10 base pairs

📌 Diameter of helix ≈ 2 nm

2. Components of DNA

DNA is made of nucleotide monomers. Each nucleotide has three parts: a deoxyribose sugar (5-carbon), a phosphate group, and a nitrogenous base. The four nitrogenous bases in DNA are Adenine, Guanine (purines — double ring), Thymine, and Cytosine (pyrimidines — single ring). Nucleotides are linked by 3'-5' phosphodiester bonds between adjacent nucleotides to form the polynucleotide chain.

Purines (double ring): Adenine (A), Guanine (G)

Pyrimidines (single ring): Thymine (T), Cytosine (C) — in DNA

Pyrimidines in RNA: Uracil (U) instead of Thymine

Base pairing: A=T (2 H-bonds), G≡C (3 H-bonds)

3. Chargaff's Rules

Erwin Chargaff discovered that in any DNA sample, [A] = [T] and [G] = [C] (molar ratios). This is called Chargaff's rule, and it provided crucial evidence for complementary base pairing. It follows directly from the double helix structure — every A on one strand pairs with a T on the other, and every G pairs with a C. Importantly, [A+G] = [T+C] (purines = pyrimidines) but [A+T] ≠ [G+C] (varies between species).

4. DNA vs RNA — Key Differences

📌 DNA: deoxyribose sugar; RNA: ribose sugar (extra OH at 2' position)

📌 DNA: Thymine (T); RNA: Uracil (U) — U has no methyl group

📌 DNA: usually double-stranded; RNA: usually single-stranded

📌 DNA: found mainly in nucleus; RNA: nucleus and cytoplasm

📌 DNA: more stable (no 2'-OH for hydrolysis); RNA: less stable

📌 Base pairing in RNA: A-U (2 H-bonds), G-C (3 H-bonds)

5. Types of RNA

mRNA (messenger RNA): Carries genetic information from DNA to ribosomes. Typically single-stranded. Contains codons (triplets of bases) that specify amino acids. About 5% of total cellular RNA.

tRNA (transfer RNA): Brings amino acids to the ribosome during translation. Has cloverleaf secondary structure with anticodon loop that pairs with mRNA codon. About 15% of cellular RNA. Smallest RNA (~75-90 nucleotides).

rRNA (ribosomal RNA): Forms the structural and catalytic core of ribosomes along with ribosomal proteins. Most abundant RNA (~80% of cellular RNA). Forms complex secondary structures with extensive base pairing within the single strand.

6. DNA Replication — Semiconservative

Meselson and Stahl's experiment (1958) proved DNA replication is semiconservative — each daughter DNA has one original (parental) strand and one new strand. Enzymes involved: Helicase (unwinds and separates strands), DNA Polymerase (synthesises new strand in 5'→3' direction only), Primase (makes RNA primer), DNA Ligase (joins Okazaki fragments on lagging strand). Replication is bidirectional from origins of replication.

7. Central Dogma of Molecular Biology

DNA → (Transcription) → RNA → (Translation) → Protein

Reverse transcription (in retroviruses): RNA → DNA

The central dogma states that genetic information flows from DNA to RNA to protein. Transcription makes mRNA from DNA template. Translation uses mRNA codons and tRNA anticodons to assemble proteins at ribosomes. Genetic code is triplet (3 bases = 1 codon), degenerate (multiple codons per amino acid), and universal (same in almost all organisms).

8. Mutations and Genetic Disorders

Mutations are changes in DNA sequence. Point mutations: substitution of one base for another (may be silent, missense, or nonsense). Frameshift mutations: insertion or deletion of bases (shifts reading frame, usually more severe). Transitions: purine-purine or pyrimidine-pyrimidine change. Transversions: purine-pyrimidine change. Sickle cell anaemia is caused by a single point mutation (A→T) in the beta-globin gene, converting Glu to Val at position 6.

Frequently Asked Questions
1. Why are the two DNA strands antiparallel?
The antiparallel arrangement allows proper geometric alignment for base pairing. Each base pair (A-T or G-C) fits perfectly between the two strands only when the strands run in opposite directions. This is also required for DNA replication — polymerase can only add nucleotides in the 5'→3' direction, necessitating the leading and lagging strand mechanism.
2. Why does G-C have 3 hydrogen bonds and A-T have 2?
Guanine has three H-bond donors/acceptors that align with three acceptors/donors on Cytosine. Adenine has only two groups that align with Thymine's two complementary groups. This molecular geometry is fixed — it's why ONLY G pairs with C and ONLY A pairs with T (Chargaff's rules). The specific geometry of purines and pyrimidines determines which bases can pair.
3. What does high GC content mean for DNA stability?
More GC pairs → more H-bonds → higher melting temperature (Tm). Thermophilic bacteria living in hot springs have high GC content DNA to maintain double helix integrity at high temperatures. AT-rich sequences denature (melt) more easily — which is why promoter regions (where DNA must unwind for transcription) are often AT-rich.
4. What is the difference between nucleoside and nucleotide?
Nucleoside = sugar + base (no phosphate). Examples: adenosine, thymidine, guanosine. Nucleotide = sugar + base + phosphate(s). Examples: AMP, ADP, ATP. DNA and RNA are polymers of nucleotides. ATP (adenosine triphosphate) is a nucleotide that serves as the universal energy currency of cells.
5. What is the Meselson-Stahl experiment?
Grew E. coli in ¹⁵N (heavy nitrogen) medium, then switched to ¹⁴N medium. After one generation: all DNA was hybrid (½ heavy, ½ light) — confirming semiconservative replication. After two generations: equal amounts of hybrid and fully light DNA. Ruled out conservative (all-old or all-new) and dispersive (randomly mixed) models.
6. What are Okazaki fragments?
During DNA replication, the lagging strand (3'→5' template) cannot be synthesised continuously because polymerase only works 5'→3'. Instead, it is made in short fragments (Okazaki fragments, ~100-200 nucleotides in eukaryotes) in the 5'→3' direction, moving away from the replication fork. DNA Ligase joins these fragments into a continuous strand.
7. What is the cloverleaf structure of tRNA?
tRNA is single-stranded but folds on itself to form intramolecular base pairs, creating a cloverleaf secondary structure with 4 stems and 3 loops: (1) Anticodon loop — pairs with mRNA codon. (2) D-loop — contains dihydrouridine. (3) TψC loop — contains pseudouridine. The 3' CCA-OH end accepts and carries the amino acid. In 3D, tRNA looks like an L-shape (twisted cloverleaf).
8. What are the three types of genetic mutations?
Silent mutation: base change doesn't change amino acid (degeneracy of genetic code). Missense mutation: base change changes amino acid (e.g., sickle cell anaemia). Nonsense mutation: base change creates stop codon — protein synthesis terminates early. Frameshift mutations (insertion/deletion) are most severe as they shift the reading frame, garbling all downstream codons.
Previous Questions
Q.
pH of BiO(OH)(s) equilibrium with K=4×10⁻¹⁰
Ionic Equilibrium · Answer: pH = 9
Q.
Match quantum numbers (n,l,ml) with orbitals 3s, 4p, 3d, 4d
Structure of Atom · Answer: A-IV, B-I, C-III, D-II
Q.
ΔG° for 2A(g)+B(g)→2D(g) at 298K thermodynamics
Thermodynamics · Answer: −0.765 kJ mol⁻¹
Q.
Match transition metal catalysts – V₂O₅, Fe, PdCl₂, Ni
d-block · Answer: A-III, B-I, C-IV, D-II
Q.
Nitriles converted to primary amines – which reagents are correct
Amines · Answer: A, C and D only